API References

Release

1.1.0

Date

Oct 21, 2022

The exact API of all functions and classes, as given by the docstrings. The API documents expected types and allowed features for all functions, and all parameters available for the algorithms.

• Strawberry import MTG function
  • add_axis_scale()
  • add_properties()
  • filter_none()
  • import_mtg_from_csv()
  • import_mtgfile()
  • name()
  • plant_number_by_varieties()
  • read_file()
  • strawberry_reader_csv()
  • topology()
  • union()
• Strawberry analysis function
  • apparent_axis()
  • branching_type()
  • complete()
  • complete_module()
  • compute_leaf_area()
  • crown_status()
  • crowntype_distribution()
  • date()
  • df2waffle()
  • extract_at_module_scale()
  • extract_at_node_scale()
  • extract_at_plant_scale()
  • genotype()
  • is_axis_root()
  • mean_leaf_area()
  • median_individuals()
  • missing_leaves()
  • modality()
  • module_tree()
  • my_bt()
  • my_complete()
  • nb_aborted_flowers()
  • nb_branching_tree()
  • nb_branching_tree_weight()
  • nb_close_flowers()
  • nb_extension_tree()
  • nb_floral_buds()
  • nb_foliar_primordia()
  • nb_inflorescence()
  • nb_initiated_buds()
  • nb_open_flowers()
  • nb_stolons()
  • nb_total_flowers()
  • nb_total_leaves()
  • nb_total_module_tree()
  • nb_vegetative_buds()
  • nb_visible_leaves()
  • nb_visible_leaves_tree()
  • no_fruits()
  • occurence_module_order_along_time()
  • plant()
  • plot_pie()
  • plot_waffle()
  • plot_waffle_matplotlib()
  • plot_waffle_plotly_heatmap()
  • plot_waffle_plotly_imshow()
  • pointwisemean_plot()
  • prob_axillary_production()
  • property()
  • stage()
  • stage_tree()
  • strawberry_dataframe()
  • to_dataframe()
  • type_of_crown()
  • visible_modules()
  • write_sequences()
• Strawberry geometry function
  • bud()
  • bud2d()
  • colors_turtle()
  • get_symbols()
  • get_symbols2d()
  • inflo_primordia()
  • inflo_primordia2d()
  • inflorescence()
  • inflorescence2d()
  • leaflet()
  • leaflet2d()
  • phytomer()
  • phytomer2d()
  • phytomer_primordia()
  • stolon()
  • stolon2d()
  • stolon_curve()
  • trifoliate()
  • trileaflet()
  • unifoliate()
  • unileaflet()
• 2D-visualisation function
  • color_code()
  • complete_module()
  • drawable()
  • graph_layout()
  • is_visible()
  • my_visitor()
  • plot2d()
  • type_of_crown()
  • visible_modules()
• 3D-visualisation function
  • color_code()
  • plant_positions()
  • plot3d()
  • strawberry_visitor()
  • visualise_plants()